Medical Biochemistry

Abbreviations

A adenine

ABC ATP-bindimg cassette

ACE angiotensin-converting enzyme

acetyl-CoA acetyl coenzyme A

ACh acetylcholine

ACP acyl carrier protein

ACTase aspartate carbamoyl transferase

ACTH adrenocorticotropic hormone

ADC AIDS-dementia complex

ADH alcohol dehydrogenase

ADH antidiuretic hormone (also known as AVP)

ADP adenosine diphosphate

AE anion exchanger

AFP α-fetoprotein

AGE advanced glycoxidation (glycation) endproduct

AHF antihemophilic factor

AICAR 5-aminoimidazole-4-carboxamide ribonucleotide

AIDS acquired immunodeficiency syndrome

AIR 5-aminoimidazole ribonucleotide

ALDH aldehyde dehydrogenase

ALP alkaline phosphatase

ALT alanine aminotransferase

AML acute myeloblastic leukemia

AMP adenosine monophosphate

ANP atrial natriuretic peptide

APC adenomatous polyposis coli (gene)

apoA, B, etc. apolipoprotein A, B, etc.

APRT adenosine phosphoribosyl transferase

APTT activated partial thromboplastin time

AQP aquaporin

ARDS acute respiratory distress syndrome

ARE antioxidant response element

AST aspartate aminotransferase

ATF activation transcription factor

ATM ataxia telangiectasia-mutated gene

ATP adenosine triphosphate

AVP arginine-vasopressin (same as antidiuretic hormone)

AZT azido-2′,3′-dideoxythymidine

Bcl-2 B cell lymphoma protein 2

BMI body mass index

BMR basal metabolic rate

BNP brain natriuretic peptide

bp base pair

2,3-BPG 2,3-bisphosphoglycerate

BUN blood urea nitrogen equivalent of (but not the same as) serum urea

bw body weight

C cytosine

CA carbonic anhydrase

CAD caspase-dependent endonuclease

CAIR carboxyaminoimidazole ribonucleotide

cAMP cyclic AMP

CAT catalase

CD cluster designation: classification system for cell surface molecules

CDG congenital disorders of glycosylation

CDGS carbohydrate-deficient glycoprotein syndromes

CDK cyclin-dependent kinase

CDKI cyclin-dependent kinase inhibitor

CDP cytidine diphosphate

CFTR cystic fibrosis transmembrane conductance regulator

cGMP cyclic GMP

CGRP calcitonin gene-related peptide

CML chronic myeloid leukemia

CMP cytidine monophosphate

CNS central nervous system

COAD chronic obstructive airways disease (synonym: COPD)

COMT catecholamine-O-methyl transferase

COPD chronic obstructive pulmonary disease (synonym: COAD)

CoQ10 coenzyme Q10 (ubiquinone)

COX-1 cyclooxygenase-1

CK creatine phosphokinase (also CPK)

CPK creatine phosphokinase (also CK)

CPS I, II carbamoyl phosphate synthetase I, II

CPT I, II carnitine palmitoyl transferase I, II

CREB cAMP-response element-binding protein

CRGP calcitonin-related gene peptide

CRH corticotropin-releasing hormone

CRP C-reactive protein

CSF cerebrospinal fluid

CT calcitonin

CTP cytidine triphosphate

CVS chorionic villous sampling

DAG diacylglycerol

DCC 'delete in colon carcinoma' gene

dNPs deoxynucleotides

ddNPs dideoxynucleotides

DEAE diethylaminoethyl

DGGE denaturing-gradient gel electrophoresis

DHAP dihydroxyacetone phosphate

DIC disseminated intravascular coagulation

DIPF, DFP diisopropylphosphofluoride

DNA deoxyribonucleic acid

DNP 2,4-dinitrophenol

dNTPs deoxynucleotides triphosphates

Dol-P dolichol phosphate

Dol-PP-GlcNAc dolichol pyrophosphate-N- acetylglucosamine

DOPA dihydroxyphenylalanine

DPPC dipalmitoyl phosphatidyl choline

DVT deep vein thrombosis

EBV Epstein–Barr virus

ECF extracellular fluid

ECM extracellular matrix

EDRF endothelium-derived relaxing factor (nitric oxide)

EDTA ethylenediaminetetraacetic acid

EF-1, 2 elongation factor-1,2

EFAs essential fatty acids

EGF epidermal growth factor

eIF-3 eukaryotic initiation factor 3

EMSA electrophoretic mobility shift assay

ENaC epithelial sodium channel

ER endoplasmic reticulum

ERK extracellular signal-regulated kinase

ESR erythrocyte sedimentation rate

FACIT fibril-associated collagen with interrupted triple helices

FAD flavin adenine dinucleotide

FADD a ‘death domain’ accessory protein

FADH2 reduced flavin adenine dinucleotide

FAICAR 5-formylaminoimidazole-4-carboxamide ribonucleotide

FAP familial adenomatous polyposis

Fas apoptosis signaling molecule: a ‘death domain’ accessory protein (CD95)

FBPase fructose bisphosphatase

FDP fibrin degradation product

FGAR formylglycinamide ribonucleotide

FGF fibroblast growth factor

FHH familial hypocalciuric hypercalcemia

FMN flavin mononucleotide

FMNH2 reduced flavin mononucleotide

FRAXA fragile X syndrome

Fru-1,6-BP fructose-1,6 bisphosphate

Fru-2,6-BP fructose-2,6 bisphosphate

Fru-2,6-BPase fructose-2,6 bisphosphatase

Fru-6-P fructose-6-phosphate

FSF fibrin-stabilizing factor

FSH follicle-stimulating hormone

G guanine

G3PDH glyceraldehyde-3-phosphate dehydrogenase

GABA γ-amino butyric acid

GAG glycosaminoglycan

Gal galactose

Gal-1-P galactose-1-phosphate

GalNAc N-acetylgalactosamine

GalNH2 galactosamine

GAP guanosine–triphosphatase activating protein

GAPDH glyceraldehyde-3-phosphate dehydrogenase

GAR glycinamide ribonucleotide

GDH glutamate dehydrogenase

GDP guanosine diphosphate

GDP-Fuc guanosine diphosphate-L-fucose

GDP-Man guanosine diphosphate-mannose

GFAP glial fibrillary acidic protein

γGT γ-glutamyl transferase

GH growth hormone

GHRH growth hormone-releasing hormone

GIP glucose-dependent insulinotropic peptide

GIT gastrointestinal tract

GK glucokinase

Glc glucose

Glc-1-P glucose-1-phosphate

Glc-6-P glucose-6-phosphate

Glc-6-Pase glucose-6-phosphatase

GlcN-6-P glucosamine-6-phosphate

GlcNAc N-acetylglucosamine

GlcNAc-1P N-acetylglucosamine-1-phosphate

GlcNAc-6-P N-acetylglucosamine-6-phosphate

GlcNH2 glucosamine

GlcUA D-glucuronic acid

GLP-1 glucagon-like peptide-1

GLUT glucose transporter (GLUT-1 to GLUT-5)

GM1 monosialoganglioside 1

GMP guanosine monophosphate

GnRH gonadotropin-releasing hormone

GP1b−IXa (etc.) glycoprotein receptor 1b−IXa (etc.)

GPx glutathione peroxidase

GRE glucocorticoid response element

GSH reduced glutathione

GSSG oxidized glutathione

GTP guanosine triphosphate

GTPase guanosine triphosphatase

5-HIAA 5-hydroxyindoleacetic acid

5-HT 5-hydroxytryptamine

Hb hemoglobin

HBOC Hb-based oxygen carrier

HCM hypercalcemia associated with malignancy

Hct hematocrit

HDL high-density lipoprotein

HGF-R hepatocyte growth factor receptor

HGP Human Genome Project

HGPRT hypoxanthine-guanine phosphoribosyl transferase

HIV human immunodeficiency virus

HLA human leukocyte antigen (system)

HLH helix-loop-helix (motif)

HMG hydroxymethylglutaryl

HMWK high-molecular-weight kininogen

HNPCC hereditary nonpolyposis colorectal cancer

hnRNA heteronuclear ribonucleic acid

HPLC high-performance liquid chromatography

HPT hyperparathyroidism

HRT hormone replacement therapy

HTGL hepatic triglyceride lipase

HTH helix-turn-helix (motif)

ICAM-1 intracellular cell adhesion molecule-1

ICF intracellular fluid

IDDM insulin-dependent diabetes mellitus (term now substituted by Type 1 diabetes mellitus)

IDL intermediate-density lipoprotein

IdUA L-iduronic acid

IEF isoelectric focusing

IFN-γ interferon-γ

Ig immunoglobulin

IGF insulin growth factor

IGF-1 insulin-like growth factor 1

IL interleukin (IL-1 to IL-29)

IMP inosine monophosphate

Inr initiator (nucleotide sequence of a gene)

IP1 I-1-P1, I-4-P1 (etc.) inositol monophosphates

IP2, I-1,3-P2, I-1,4-P2 inositol bisphosphates

IP3, I-1,4,5-P3 inositol trisphosphate

IRE iron response element

IRE-BP IRE-binding protein

IRMA immunoradiometric assay

ITAM immunoreceptor tyrosine activation motif

ITIM immunoreceptor tyrosine inhibition motif

JAK Janus kinase

JNK Jun N-terminal kinase

K equilibrium constant

kb kilobase

kbp kilobase pair(s)

KCCT kaolin-cephalin clotting time

KIP2 cell cycle regulatory molecule

Km Michaelis constant

LACI lipoprotein-associated coagulation inhibitor

LCAT lecithin: cholesterol acyltransferase

LDH lactate dehydrogenase

LDL low-density lipoprotein

LH luteinizing hormone

LPL lipoprotein lipase

LPS lipopolysaccharide

LRP LDL-receptor-related protein

M-CSF-R macrophage colony-stimulating factor receptor

malonyl-CoA malonyl coenzyme A

Man mannose

Man-1-P mannose-1-phosphate

Man-6-P mannose-6-phosphate

MAO monoamine oxidase

MAPK mitogen-activated protein kinase (a superfamily of signal-transducing kinases)

Mb myoglobin

MCHC mean corpuscular hemoglobin concentration

MCP-1 monocyte chemoattractant protein-1

MCV mean corpuscular volume

MDR multidrug resistance

MEKK mitogen-activated protein kinase kinase

MEN IIA multiple endocrine neoplasia type IIA

met-tRNA methionyl-tRNA

MGUS monoclonal gammopathy of uncertain significance

MHC major histocompatibility complex

miRNAs micro RNAs

MMPs matrix metalloproteinases

MPO myeloperoxidase

mRNA messenger ribonucleic acid

MRP multidrug resistance-associated protein

MS mass spectrometry

MSH melanocyte-stimulating hormone

MSUD maple syrup urine disease

MyoD muscle cell-specific transcription factor

Na+/K+-ATPase sodium-potassium ATPase

NABQI N-acetyl benzoquinoneimine

NAC N-acetylcysteine

NAD+ nicotinamide adenine dinucleotide (oxidized)

NADH nicotinamide adenine dinucleotide (reduced)

NADP+ nicotinamide adenine dinucleotide phosphate (oxidized)

NADPH nicotinamide adenine dinucleotide phosphate (reduced)

NANA N-acetylneuraminic acid (sialic acid)

ncRNAs noncoding RNAs

NF nuclear factor

NF-II type II neurofibromatosis

NGF nerve growth factor

NHE sodium-hydrogen exchanger

NIDDM noninsulin-dependent diabetes mellitus (term now substituted by Type 2 diabetes mellitus)

NKCC1 Na-K-Cl co-transporter 1 (etc.)

NMDA N-methyl-D-aspartate

NPY neuropeptide Y

NSAID nonsteroidal antiinflammatory drug

nt nucleotide (as measure of size/length of a nucleic acid)

1,25(OH)2D3 1,25-dihydroxy vitamin D3

OGTT oral glucose tolerance test

8-oxoG 8-oxo-2′-deoxyguanosine

OxS oxidative stress

3-PG 3-phosphoglycerate

p38RK p38-reactivating kinase

Pa pascal

PA phosphatidic acid

PAF platelet-activating factor

PAGE polyacrylamide gel electrophoresis

PAI-1 plasminogen activator inhibitor-1

PAPS phosphoadenosine phosphosulfate

PC phosphatidyl choline

PC pyruvate carboxylase

PCR polymerase chain reaction

PDE phosphodiesterase

PDGF platelet-derived growth factor

PDH pyruvate dehydrogenase

PDK phosphatidylinositol dependent kinase

PE phosphatidyl ethanolamine

PEP phosphoenolpyruvic acid

PEPCK phosphoenolpyruvate carboxykinase

PF3 platelet factor 3

PFK-1 (-2) phosphofructokinase 1 (2)

PGG2 prostaglandin G2 (etc.)

PGK phosphoglycerate kinase

PGM phosphoglucomutase

PHHI persistent hyperinsulinemic hypoglycemia of infancy

PHP pseudohypoparathyroidism

Pi inorganic phosphate

PI-3-K phosphoinositide-3-kinase

PIP2/PIP3 phosphatidylinositol bisphosphate/trisphosphate

PK pyruvate kinase

PKA/PKC protein kinase A/C

PKU phenylketonuria

PL phospholipase A, etc.

PLA/PLC phospholipase A/C

PMA phorbol myristic acetate

PNS peripheral nervous system

PPARs peroxisome proliferator-activated receptors

PPi inorganic pyrophosphate

PRL prolactin

PrP prion protein

PRPP 5-phosphoribosyl-α-pyrophosphate

PS phosphatidylserine

PT prothrombin time

PTA plasma thromboplastin antecedent

PTH parathyroid hormone

PTHrP parathyroid hormone-related protein

PTK protein tyrosine kinase

PTPase phosphotyrosine phosphatase

Py pyrimidine base (in a nucleotide sequence)

R receptor (with qualifier, not alone)

RAIDD a ‘death domain’ accessory protein

Rb retinoblastoma protein

RBC red blood cell

RDS respiratory distress syndrome

RER rough endoplasmic reticulum

RFLP restriction fragment length polymorphism

RIP a ‘death domain’ accessory protein

RKK p38RK homologue of MEK

RNA ribonucleic acid

RNAi RNA interference

RNAPol I/II RNA polymerase I/II

RNR ribonucleotide reductase

RNS reactive nitrogen species

ROS reactive oxygen species

S Svedberg unit

SACAIR 5-aminoimidazole-4-(N-succinylocarboxamide) ribonucleotide

SAM S-adenosyl methionine

SAPK stress-activated protein kinase

SCIDS severe combined immunodeficiency syndrome

scuPA single-chain urinary-type plasminogen activator

SD standard deviation

SDS sodium dodecyl sulfate

SDS-PAGE sodium dodecyl sulfate-polyacrylamide gel electrophoresis

SEK SAPK homologue of MEK

SER smooth endoplasmic reticulum

ser-P serine phosphate

SGLT Na+-coupled glucose symporter

SH(Figs only) steroid hormone

SH2 Src-homology region-2

SIADH syndrome of inappropriate antidiuretic hormone secretion

siRNAs small interfering RNAs

snRNA small nuclear RNA

SOD superoxide dismutase

SPCA serum prothrombin conversion accelerator

Src a protein tyrosine kinase

SRE steroid response element

SREBPs sterol regulatory element-binding proteins (SREBP 1a, SREBP 1c)

SRP signal recognition particle

SSCP single-strand conformational polymorphism

SSRI selective serotonin reuptake inhibitor

STAT signal transducer and activator of transcription

SUR sulfonylurea receptor

T thymine

T3 tri-iodothyronine

T4 thyroxine

TAG triacylglycerol (triglyceride)

TAP transporter associated with antigen presentation

TB tuberculosis

TBG thyroid-binding globulin

TCA tricarboxylic acid cycle

TCT thrombin clotting time

TEG thromboelastography

TF transcription factor (with qualifier)

TFPI tissue factor pathway inhibitor

TG triglyceride (triacylglycerol)

TGF(-β) transforming growth factor-β

Tmax Km for facilitated transport protein

TNF tumor necrosis factor

TNF-R tumor necrosis factor receptor

tPA tissue-type plasminogen activator

TRADD a ‘death domain’ accessory protein

TRAFS a ‘death domain’ accessory protein

TRH thyrotropin-releasing hormone

TSH thyroid-stimulating hormone (thyrotropin)

TTP thymidine triphosphate

TXA2 thromboxane A2

U uridine

UCP uncoupling protein

UDP uridine diphosphate

UDP-Gal UDP-galactose

UDP-GalNAc UDP-N-acetylgalactosamine

UDP-Glc UDP-glucose

UDP-GlcNAc UDP-N-acetylglucosamine

UDP-GlcUA UDP glucuronic acid

UMP uridine monophosphate

uPA urinary-type plasminogen activator

UTR untranslated region

UV ultraviolet

VCAM-1 vascular cell adhesion molecule 1

VDCC voltage-dependent calcium channel

VIP vasoactive intestinal peptide

VLDL very low-density lipoprotein

vWF von Willebrand factor

WAF1 cell cycle regulator

X-SCID X-linked severe combined immunodeficiency

XMP xanthine monophosphate

XO xanthine oxidase

ZP3 zona pellucida 3 glycoprotein



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